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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG464700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 319aa MW: 34293.8 Da PI: 9.4588 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 167 | 221 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k Pavir.9NG464700.1.p 167 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTK 221 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.6 | 5.3e-41 | 167 | 256 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr + Pavir.9NG464700.1.p 167 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREVAELR-A 255 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Pavir.9NG464700.1.p 256 L 256 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.8E-27 | 11 | 136 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 5.85E-19 | 151 | 224 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 153 | 217 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 163 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-17 | 165 | 227 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-17 | 167 | 224 | No hit | No description |
Pfam | PF00046 | 7.2E-17 | 167 | 221 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 198 | 221 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.8E-23 | 223 | 266 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-10 | 223 | 257 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEMMVNARDQ EQHGLGLSLS LSIATAHPVE PPPQRAISVA PISSHPAPPM PPQPQWWSGA 60 GLFFSPSSGM DRSLERKQQP GAVAACHGHE MPFLRGIDVN RAPAGEARRG SCSEDEEPAA 120 SSPNSTLSSL SGKRAAATRS GGDQTPRAGG GGVGSDDEDS GAGGGSRKKL RLSKDQAAVL 180 EESFKEHNTL NPKQKAALAK QLNLKPRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT 240 EENRRLQREV AELRALKLVA PHQYARMPPP TTLTMCPSCE RLATADEAGR AARPAPTGLP 300 WGPVPVRPVF VDGPARRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | SRKKLRL |
2 | 215 | 223 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2404 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU942452 | 0.0 | EU942452.1 Zea mays clone 1503625 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983649.1 | 1e-169 | PREDICTED: homeobox-leucine zipper protein HOX1 isoform X2 | ||||
Swissprot | Q40691 | 1e-84 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 1e-84 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | K4ABY1 | 1e-167 | K4ABY1_SETIT; Uncharacterized protein | ||||
STRING | Si036388m | 1e-166 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 5e-68 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG464700.1.p |